Amber Ligand Parametrization

This protocol parametrizes and prepares a ligand to be used in Amber simulations using pdb4amber and Antechamber. Additional modifications, handled by Scipion-chem, might be addressed so Amber is able to read the input structure.

Input

Note

All parameters include a help button that gives further information for each of them.

Amber Ligand Parametrization form

The result of this protocol is a AmberSystem, containing the parametrized ligand.