:orphan: true

.. _amber-ligand-parametrization:

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Amber Ligand Parametrization
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This protocol parametrizes and prepares a ligand to be used in Amber simulations using pdb4amber and Antechamber. 
Additional modifications, handled by Scipion-chem, might be addressed so Amber is able to read the input structure.

Input
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.. include:: ../../../templates/plugins/input-help.rst

.. image:: ../../../../_static/images/plugins/amber/ligand-parametrization/form.png
   :alt: Amber Ligand Parametrization form
   :height: 400
   :align: center

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The result of this protocol is a ``AmberSystem``, containing the parametrized ligand.