
scipion-chem-modeller
Modeller is a energy-based tool for homology or comparative modeling of protein three-dimensional structures.
Installation
A) Requirements
In order to use this plugin, you need to install first scipion-chem.
B) Installation steps
Install the stable version
Through the plugin manager GUI by launching Scipion and following Others >> Plugin Manager, or
scipion3 installp -p scipion-chem-lephar
Developer’s version
Download repository:
git clone https://github.com/scipion-chem/scipion-chem-lephar.git
Install:
scipion3 installp -p /path/to/scipion-chem-lephar --devel
Warning
Installation of the stable version through the Plugin Manager
or with the command provided above is not available yet.
Please install the developer version until a stable version is released, or install the latest stable version with the following steps:
cd /path/to/scipion-chem-lephar && git checkout master && scipion3 installp -p . --devel
Protocols
Comparative modelling: Comparative modelling of a protein sequence using one or several structure templates.
Mutation modelling: Residue mutation modelling and energy optimization.