scipion-chem-p2rank

P2Rank is one of the most widely known programs for protein pocket detection based on machine learning. In this plugin we include the main tool for pocket prediction, P2Rank.

Installation

A) Requirements

In order to use this plugin, you need to install first scipion-chem.

B) Installation steps

Install the stable version

Through the plugin manager GUI by launching Scipion and following Others >> Plugin Manager, or

scipion3 installp -p scipion-chem-p2rank

Developer’s version

Download repository:

git clone https://github.com/scipion-chem/scipion-chem-p2rank.git

Install:

scipion3 installp -p /path/to/scipion-chem-p2rank --devel

Warning

Installation of the stable version through the Plugin Manager or with the command provided above is not available yet.

Please install the developer version until a stable version is released, or install the latest stable version with the following steps:

cd /path/to/scipion-chem-p2rank && git checkout master && scipion3 installp -p . --devel

Protocols

P2Rank pocket prediction: Predicts the pockets of an atomic structure based on a machine learning model over the protein surface.