Consensus Structural ROIs

This protocol performs a consensus operation over several SetOfStructROIs, studying which of them are shared among all or a subset of the input sets. The protocol can be used for example to extract the most relevant and robust results from different methods that predict protein pockets, or to extract which pockets predicted by a certain software overlap with some interesting regions defined manually.

The protocol works by clustering the structural ROIs from the different inputs and filtering those that are not repeated sufficiently among the inputs. For a pair of structural ROIs to be considered overlapping, they must share a certain proportion of their involved residues.

Input

Note

All parameters include a help button that gives further information for each of them.

The result of this protocol is a SetOfStructROIs containing the consensus structural ROIs.

Test

This protocol has an integrated test that can be run using the following command:

scipion3 tests pwchem.tests.tests_structROIs.TestConsensusStructROIs