Pairwise Alignment

This protocol performs a pairwise alignment using clustal omega over two input sequences. These sequences can be input either from a Sequence or an AtomStruct object, in the later, the chain must also be specified.

Input

Note

All parameters include a help button that gives further information for each of them.

Pairwise Alignment form

The result of this protocol is a SetOfSequences with the two input sequences aligned.

Pairwise Alignment output

Test

This protocol has an integrated test that can be run using the following command:

scipion3 tests pwchem.tests.tests_sequences.TestPairwiseAlign