Map Sequence ROIs

This protocol maps a set of sequence ROIs to an atomic structure where the sequence can be mapped. The alignment of the sequence that contains the ROIs and the one coming from the structure can be previewed. Then, those residues defined as sequence ROIs are mapped to the surface of the structure and those surface regions next to each other are clustered to build structural ROIs.

Input

Note

All parameters include a help button that gives further information for each of them.

Map Sequence ROIs form

The result of this protocol is a SetOfStructROIs with the mapped sequence ROIs over the input structure.

Map Sequence ROIs output

Test

This protocol has an integrated test that can be run using the following command:

scipion3 tests pwchem.tests.tests_sequences.TestMapSeqROIs