Import Sequence ROIs

This protocol imports a SetOfSequenceROIs, meaning a set of Regions Of Interest (ROI) in a sequence. As for today, this protocol is oriented to epitopes defined in IEDB. More origins of these ROIs will be added in the future.

Input

Note

All parameters include a help button that gives further information for each of them.

Import Sequence ROIs form

The result of this protocol are several SetOfSequenceROIs, one for each sequence defined in the input, where the defined ROIs are those epitopes defined in the input.

Test

This protocol has an integrated test that can be run using the following command:

scipion3 tests pwchem.tests.tests_imports.TestImportSeqROIs