Extract Sequence ROIs

This protocol defines a SetOfSequenceROIs from an input SequenceChem based on the values of an attribute stored in this sequence object.

Input

Note

All parameters include a help button that gives further information for each of them.

Extract Sequence ROIs form

The user can preview the attribute values through the sequence in order to tune this threshold.

Extract Sequence ROIs output

The result of this protocol is a SetOfSequenceROIs with the regions whose attribute values or over / below the threshold set.


Test

This protocol has an integrated test that can be run using the following command:

scipion3 tests pwchem.tests.tests_sequences.TestExtractSequenceROIs