Define Sequence ROIs

This protocol defines a SetOfSequenceROIs from a Sequence or SequenceVariants object. The user can define a list of Regions Of Interest from sequence segments, variants or mutations in the input.

Input

Note

All parameters include a help button that gives further information for each of them.

Import set of sequences form

The result of this protocol is a SetOfSequenceROIs with the ROIs defined in the input.

Import set of sequences output

Test

This protocol has an integrated test that can be run using the following command:

scipion3 tests pwchem.tests.tests_sequences.TestDefineSequenceROIs