Create local database

This protocol creates a local database in BLAST format and stores it in the plugin folder. The user can create databases either from a SetOfSequences or from default databases in BLAST. The user must be aware of this last option, since most of the BLAST databases are quite big and downloading them will expend high amounts of time and storage.

Input

Note

All parameters include a help button that gives further information for each of them.

Create local database form

This protocol does not output any object, but it saves the database in the plugin folder.

Test

This protocol has an integrated test that can be run using the following command:

scipion3 tests blast.tests.test_blast.TestDatabaseBLAST