:orphan: true

.. _amber-md-simulation:

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Amber Molecular Dynamics (MD) Simulation
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This protocol  defines and executes a Amber MD simulation.

Input
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.. include:: ../../../templates/plugins/input-help.rst

.. image:: ../../../../_static/images/plugins/amber/md-simulation/form.png
   :alt: Amber Molecular Dynamics (MD) Simulation form
   :height: 400
   :align: center

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The result of this protocol is a ``AmberSystem``, containing the prepared system together with the generated trajectory.