.. _objects:

#########################
Objects
#########################
Scipion Chem defines a list of objects aimed to provide a Scipion wrapper for the most common types of files and structures 
used in Virtual Drug Screening.

.. warning::
    This is WIP. Information will be filled as time goes by.

General
=======================

- :ref:`objects-database-id`: 

- :ref:`objects-set-of-database-id`: 

- :ref:`objects-sequence-chem`: 

- :ref:`objects-set-of-sequence-chem`: 

- :ref:`objects-sequence-variants`: 

- :ref:`objects-small-molecule`: 

- :ref:`objects-set-of-small-molecules`: 

- :ref:`objects-binding-site`: 

- :ref:`objects-set-of-binding-sites`: 

- :ref:`objects-sequence-roi`: 

- :ref:`objects-set-of-sequence-rois`: 

- :ref:`objects-struct-roi`: 

- :ref:`objects-set-of-struct-rois`: 

- :ref:`objects-protein-atom`: 

- :ref:`objects-protein-residue`: 

- :ref:`objects-md-system`: 

- :ref:`objects-pharm-feature`: 

- :ref:`objects-pharmacophore-chem`: 

Reactions
=======================

- :ref:`objects-chemical-reaction`: Represents a chemical reaction, where one or more chemical compounds (``SmallMolecules``) produce other compounds.